精准医学生物信息实验室

Bioinformatics Laboratory for Precision Medicine

疾病表型关联数据库

中国生物信息学工具平台

近期软件

旧软件

  •  EST-ferret: a user-configurable, automated package for convenient analysis of ESTs data. It includes necessary steps for ESTs cleaning, submission to dbEST, clustering, identification and annotation.
  •  GOprofiler: associating ESTs with Gene Ontology annotations.
  •  GOmatrix: associating gene groups in gene expressions with Gene Ontology categories. It is able to process thousand times of Fisher's Exact tests to check significance and provides a GUI for data input.
  •  CORR for ExprAlign: ExprAlign is an approach for clustering gene expression data using Pearson's correlation coefficients. CORR is a C programme to compute million times of Pearson's correlation coefficients in minutes. Its performance is much better than similar programmes in MatLab.
  •  FindOrthologs: a PERL programme to find orthologous relationships across three species.
  •  Balsamic – protein 3D structure visualisation

生物序列专利数据库

 Patent proteins cover sequences of EPO (European Patent Office) proteins, JPO (Japan Patent Office) proteins, KIPO (Korean Intellectual Property Office) proteins and USPTO (United States Patent and Trademark Office) proteins.

 Patent nucleotides contain the patent class data in the EMBL-Bank.

 Non-redundant patent sequences consist of 2 levels databases. Level-1 non-redundant patent sequences are 100% identical over the same length; Level-2 non-redundant patent sequences are identical and belong to a same patent family (a same invention).